Index

A

add_cluster() (in module coral.utils.preprocessing)

average_attention_weights_for_unique_edges() (in module coral.inference)

C

compare_gene_expression() (in module coral.utils.visualization) compare_gene_expression_all() (in module coral.utils.visualization) coral.inference module coral.model module coral.trainer.train module

coral.utils.preprocessing module coral.utils.visualization module CORAL_model (class in coral.model.model_core) create_model() (in module coral.model)

D

display_reconst() (in module coral.utils.visualization)

downsample_spatial_data() (in module coral.utils.preprocessing)

E

efficient_contrastive_loss() (coral.model.model_core.CORAL_model method)

encode() (coral.model.model_core.CORAL_model method)

F

forward() (coral.model.model_core.CORAL_model method)

G

generate_and_validate() (in module coral.inference)

I

infer_v() (coral.model.model_core.CORAL_model method)

M

module coral.inference coral.model coral.trainer.train coral.utils.preprocessing coral.utils.visualization

N

NegBinom (class in coral.trainer.train)

P

plot_latent_umap() (in module coral.utils.visualization) plot_spatial() (in module coral.utils.visualization) plot_umap() (in module coral.utils.visualization) plot_umap_gene() (in module coral.utils.visualization)

prepare_local_subgraphs() (in module coral.utils.preprocessing) preprocess_data() (in module coral.utils.preprocessing) px_r (coral.model.model_core.CORAL_model property) px_r_sc (coral.model.model_core.CORAL_model property) py_r (coral.model.model_core.CORAL_model property)

R

reindex_adata_qz() (in module coral.inference)

reparameterize() (coral.model.model_core.CORAL_model method)

T

train_model() (in module coral.trainer.train)

V

visualize_subgraph() (in module coral.utils.visualization)