Preprocessing

coral.utils.preprocessing.preprocess_data(adata_smoothed, adata_adt)

coral.utils.preprocessing.prepare_local_subgraphs(combined_expr, codex_coords, one_hot_cell_types, spot_indices, visium_expr, n_neighbors=20)

coral.utils.preprocessing.add_cluster(adata, res: float = 0.1, use_rep_for_cluster: str | None = None, need_lognormed: bool | None = None)

coral.utils.preprocessing.downsample_spatial_data(adata, block_size=3)