API Reference

• Model
  • Model Creation
  • CORAL Model
• Preprocessing
  • preprocess_data()
  • prepare_local_subgraphs()
  • add_cluster()
  • downsample_spatial_data()
• Visualization
  • plot_spatial()
  • plot_umap()
  • plot_latent_umap()
  • plot_umap_gene()
  • display_reconst()
  • visualize_subgraph()
  • compare_gene_expression_all()
  • compare_gene_expression()
• Inference
  • generate_and_validate()
  • reindex_adata_qz()
  • average_attention_weights_for_unique_edges()
• Trainer
  • train_model()
  • NegBinom